# BridgeDb

```{=html}
<!-- this file is autogenerated. edit bridgedb.json instead -->
```
A framework to map identifiers between various biological databases and
related sources.

<!---![screenshot of
%service%](https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/bridgedb.png "Click on the image to go to the service")--->

<img src='https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/bridgedb.png' alt="drawing" width='200' height='200'>

## Service

-   cloud: [https://bridgedb.cloud.vhp4safety.nl/](https://bridgedb.cloud.vhp4safety.nl/)
-   Login required: no
-   Implementation status:
-   TRL:
-   Type: -
-   Contact:\
-   API Type: REST
-   Demo: [%demo.title%](%demo.url%)
-   Categories: -
-   Targeted users: -
-   Relevant VHP4Safety Use case: -

## Tool specifications

-   Provided by: bigcatum
-   Citation: <https://doi.org/10.1186/1471-2105-11-5>
-   Version: 2.3.3
-   License: Apache-2.0
-   Source Code: <https://github.com/bridgedb/BridgeDb>
-   Docker: <https://hub.docker.com/r/bigcatum/bridgedb>
-   Bio.tools: <https://bio.tools/bridgedb>
-   TeSS: <https://tess.elixir-europe.org/search?q=bridgedb>

<h3 id="tess-widget-materials-header"></h3>

<div id="tess-widget-materials-list" class="tess-widget tess-widget-list"></div>
<script>
function initTeSSWidgets() {
    var query = 'bridgedb';
    if (query.trim() != "") {
        TessWidget.Materials(document.getElementById('tess-widget-materials-list'),
            'SimpleList',
            {
                opts: {
                  enableSearch: false
                },
                params: {
                    pageSize: 5,
                    q: query
                }
            });
        document.getElementById('tess-widget-materials-header').innerHTML = "ELIXIR TeSS material"
    }
}
</script>
<script async="" defer="" src="https://elixirtess.github.io/TeSS_widgets/js/tess-widget-standalone.js" onload="initTeSSWidgets()"></script>


## Tool integration

-   [ ] Utilises the VHP4Safety APIs to ensure that each service is
    accessible to our proposed interoperability layer.
-   [ ] Is annotated according to the semantic interoperability layer
    concept using defined ontologies.
-   [ ] Is containerised for easy deployment in virtual environments of
    VHP4Safety instances.
-   [ ] Has documented scientific and technical background.
-   [ ] Is deployed into the VHP4Safety development environment.
-   [ ] Is deployed into the VHP4Safety production environment.
-   [ ] Is listed in the VHP4Safety discovery services.
-   [ ] Is listed in other central repositories like eInfraCentral,
    bio.tools and TeSS (ELIXIR).
-   [ ] Provides legal and ethical statements on how the service can be
    used.

<!---
```{=html}
<script type="application/ld+json">
{
  "@context": "https://schema.org/",
  "@type": "SoftwareApplication",
  "http://purl.org/dc/terms/conformsTo": {
      "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/ComputationalTool/1.0-RELEASE"
  },
  "@id" : "https://vhp4safety.github.io/cloud/service/bridgedb",
  "name": "BridgeDb", 
  "description": "A framework to map identifiers between various biological databases and related sources.",
  "url": "https://bridgedb.cloud.vhp4safety.nl/"
}
</script>
```
--->