BridgeDb

A framework to map identifiers between various biological databases and related sources.

Service

• cloud: https://bridgedb.cloud.vhp4safety.nl/

• Login required: no

• Implementation status:

• TRL:

• Type: -

• Contact:\

• API Type: REST

• Demo: %demo.title%

• Categories: -

• Targeted users: -

• Relevant VHP4Safety Use case: -

Tool specifications

• Provided by: bigcatum

• Citation: https://doi.org/10.1186/1471-2105-11-5

• Version: 2.3.3

• License: Apache-2.0

• Source Code: https://github.com/bridgedb/BridgeDb

• Docker: https://hub.docker.com/r/bigcatum/bridgedb

• Bio.tools: https://bio.tools/bridgedb

• TeSS: https://tess.elixir-europe.org/search?q=bridgedb

Tool integration

• [ ] Utilises the VHP4Safety APIs to ensure that each service is accessible to our proposed interoperability layer.

• [ ] Is annotated according to the semantic interoperability layer concept using defined ontologies.

• [ ] Is containerised for easy deployment in virtual environments of VHP4Safety instances.

• [ ] Has documented scientific and technical background.

• [ ] Is deployed into the VHP4Safety development environment.

• [ ] Is deployed into the VHP4Safety production environment.

• [ ] Is listed in the VHP4Safety discovery services.

• [ ] Is listed in other central repositories like eInfraCentral, bio.tools and TeSS (ELIXIR).

• [ ] Provides legal and ethical statements on how the service can be used.