DECIMER

Online service to extract chemical structures from PDFs and images.

Service

• cloud: https://decimer.ai/

• Login required: No

• Implementation status:

• TRL:

• Type: -

• Contact:\

• API Type:

• Demo: %demo.title%

• Categories: -

• Targeted users: -

• Relevant VHP4Safety Use case: -

Tool specifications

• Provided by: University of Jena

• Citation: https://doi.org/10.1186/s13321-021-00538-8

• Version: Latest

• License: MIT license

• Source Code: https://github.com/Kohulan/DECIMER-Image_Transformer

• Docker: https://github.com/OBrink/DECIMER_Web

• Bio.tools:

• TeSS:

Tool integration

• [ ] Utilises the VHP4Safety APIs to ensure that each service is accessible to our proposed interoperability layer.

• [ ] Is annotated according to the semantic interoperability layer concept using defined ontologies.

• [ ] Is containerised for easy deployment in virtual environments of VHP4Safety instances.

• [ ] Has documented scientific and technical background.

• [ ] Is deployed into the VHP4Safety development environment.

• [ ] Is deployed into the VHP4Safety production environment.

• [ ] Is listed in the VHP4Safety discovery services.

• [ ] Is listed in other central repositories like eInfraCentral, bio.tools and TeSS (ELIXIR).

• [ ] Provides legal and ethical statements on how the service can be used.