TXG-MAPr

An R-Shiny-based implementation of weighted gene co-expression network analysis (WGCNA) obtained from the Primary Human Hepatocytes (PHH) TG-GATEs dataset.

Service

• cloud: https://txg-mapr.eu/

• Login required: Yes

• Implementation status:

• TRL:

• Type: -

• Contact: Steven J. Kunnen

• API Type:

• Demo: %demo.title%

• Categories: -

• Targeted users: -

• Relevant VHP4Safety Use case: -

Tool specifications

• Provided by: Leiden University

• Citation: https://doi.org/10.1007/s00204-021-03141-w

• Version:

• License: Proprietary

• Source Code:

• Docker:

• Bio.tools: https://bio.tools/TXG-MAPr

• TeSS:

Tool integration

• [ ] Utilises the VHP4Safety APIs to ensure that each service is accessible to our proposed interoperability layer.

• [ ] Is annotated according to the semantic interoperability layer concept using defined ontologies.

• [ ] Is containerised for easy deployment in virtual environments of VHP4Safety instances.

• [ ] Has documented scientific and technical background.

• [ ] Is deployed into the VHP4Safety development environment.

• [ ] Is deployed into the VHP4Safety production environment.

• [ ] Is listed in the VHP4Safety discovery services.

• [ ] Is listed in other central repositories like eInfraCentral, bio.tools and TeSS (ELIXIR).

• [ ] Provides legal and ethical statements on how the service can be used.